Index

A

add_computed_value_process() (summer.model.CompartmentalModel method) add_crude_birth_flow() (summer.model.CompartmentalModel method) add_death_flow() (summer.model.CompartmentalModel method) add_function_flow() (summer.model.CompartmentalModel method) add_importation_flow() (summer.model.CompartmentalModel method) add_infection_density_flow() (summer.model.CompartmentalModel method)

add_infection_frequency_flow() (summer.model.CompartmentalModel method) add_infectiousness_adjustments() (summer.stratification.Stratification method) add_replacement_birth_flow() (summer.model.CompartmentalModel method) add_transition_flow() (summer.model.CompartmentalModel method) add_universal_death_flows() (summer.model.CompartmentalModel method) adjust_population_split() (summer.model.CompartmentalModel method) AgeStratification (class in summer.stratification)

B

BackendType (class in summer.model)

C

Compartment (class in summer.compartment) CompartmentalModel (class in summer.model)

compartments (summer.model.CompartmentalModel attribute) CrudeBirthFlow (class in summer.flows)

D

DeathFlow (class in summer.flows)

derived_outputs (summer.model.CompartmentalModel attribute) deserialize() (summer.compartment.Compartment static method)

E

enforce_multiply() (in module summer.adjust)

enforce_wrapped() (in module summer.adjust) EULER (summer.solver.SolverType attribute)

F

FUNCTION (summer.flows.WeightType attribute)

FunctionFlow (class in summer.flows)

G

get_computed_value_keys() (summer.model.CompartmentalModel method) get_derived_outputs_df() (summer.model.CompartmentalModel method) get_flow_adjustment() (summer.stratification.Stratification method) get_matching_compartments() (summer.model.CompartmentalModel method) get_net_flow() (summer.flows.CrudeBirthFlow method) (summer.flows.DeathFlow method) (summer.flows.FunctionFlow method) (summer.flows.ImportFlow method) (summer.flows.ReplacementBirthFlow method) (summer.flows.TransitionFlow method)

get_new_value() (summer.adjust.Multiply method) (summer.adjust.Overwrite method) get_outputs_df() (summer.model.CompartmentalModel method)

H

has_name() (summer.compartment.Compartment method) has_name_in_list() (summer.compartment.Compartment method)

has_strata() (summer.compartment.Compartment method) has_stratum() (summer.compartment.Compartment method)

I

ImportFlow (class in summer.flows) InfectionDensityFlow (class in summer.flows) InfectionFrequencyFlow (class in summer.flows) initial_population (summer.model.CompartmentalModel attribute)

is_ageing() (summer.stratification.Stratification method) is_death_flow (summer.flows.DeathFlow attribute) is_match() (summer.compartment.Compartment method) is_strain() (summer.stratification.Stratification method)

M

module summer.adjust summer.compartment summer.flows summer.model summer.solver summer.stratification

Multiply (class in summer.adjust)

O

ODE_INT (summer.solver.SolverType attribute)

outputs (summer.model.CompartmentalModel attribute) Overwrite (class in summer.adjust)

R

REFERENCE (summer.model.BackendType attribute) ReplacementBirthFlow (class in summer.flows) request_aggregate_output() (summer.model.CompartmentalModel method) request_computed_value_output() (summer.model.CompartmentalModel method) request_cumulative_output() (summer.model.CompartmentalModel method)

request_function_output() (summer.model.CompartmentalModel method) request_output_for_compartments() (summer.model.CompartmentalModel method) request_output_for_flow() (summer.model.CompartmentalModel method) run() (summer.model.CompartmentalModel method) run_stochastic() (summer.model.CompartmentalModel method) RUNGE_KUTTA (summer.solver.SolverType attribute)

S

serialize() (summer.compartment.Compartment method) set_baseline() (summer.model.CompartmentalModel method) set_derived_outputs_whitelist() (summer.model.CompartmentalModel method) set_flow_adjustments() (summer.stratification.Stratification method) set_initial_population() (summer.model.CompartmentalModel method) set_mixing_matrix() (summer.stratification.Stratification method) set_population_split() (summer.stratification.Stratification method) set_validation_enabled() (summer.model.CompartmentalModel method) SOLVE_IVP (summer.solver.SolverType attribute) solve_ode() (in module summer.solver) solve_with_euler() (in module summer.solver) solve_with_ivp() (in module summer.solver) solve_with_odeint() (in module summer.solver) solve_with_rk4() (in module summer.solver) SolverType (class in summer.solver) STATIC (summer.flows.WeightType attribute)

STOCHASTIC (summer.solver.SolverType attribute) StrainStratification (class in summer.stratification) Stratification (class in summer.stratification) stratify() (summer.compartment.Compartment method) stratify_with() (summer.model.CompartmentalModel method) summer.adjust module summer.compartment module summer.flows module summer.model module summer.solver module summer.stratification module

T

times (summer.model.CompartmentalModel attribute)

TransitionFlow (class in summer.flows)

V

VECTORIZED (summer.model.BackendType attribute)

W

WeightType (class in summer.flows)